Fruit tree pruning is the cutting and removing of selected parts of a fruit tree. It spans a number of horticultural techniques. Pruning often means cutting branches back, sometimes removing smaller limbs entirely. It may also mean removal of young shoots, buds, and leaves.

Established orchard practice of both organic and nonorganic types typically includes pruning. Pruning can control growth, remove dead or diseased wood, and stimulate the formation of flowers and fruit buds. It is widely stated that careful attention to pruning and training young trees improves their later productivity and longevity, and that good pruning and training can also prevent later injury from weak crotches or forks (where a tree trunk splits into two or more branches) that break from the weight of fruit, snow, or ice on the branches.

Some sustainable agriculture or permaculture personalities, such as Sepp Holzer and Masanobu Fukuoka, advocate and practice no-pruning methods, which runs counter to the widespread confidence in the idea that pruning produces superior results compared with not pruning. Many books about fruit-growing assert advantages and disadvantages of pruning or not pruning, although without randomized controlled trials, it is hard to separate theorizing and traditional knowledge from evidence-based recommendations.